It combines source-derived metadata with optional AI-assisted security classification so that a programmer can quickly understand what a test suite contains, which tests appear security-relevant, and which methods may benefit from consistent @Tag and @DisplayName annotations.

For each discovered test method, MethodAtlas reports:

fqcn Fully qualified class name
method Test method name
loc Inclusive lines of code for the method declaration
tags Existing JUnit @Tag values declared on the method

When AI enrichment is enabled, it also reports:

ai_security_relevant Whether the model classified the test as security-relevant
ai_display_name Suggested security-oriented display name
ai_tags Suggested security taxonomy tags
ai_reason Short rationale for the classification

Method discovery is AST-based via JavaParser rather than regex-based parsing. The CLI scans files ending in *Test.java, recognizes JUnit Jupiter methods annotated with @Test, @ParameterizedTest, or @RepeatedTest, and extracts tags from both repeated @Tag usage and @Tags({...}).

Distribution layout

After building and packaging, the distribution archive has this structure:

methodatlas-<version>/
├── bin/
│   ├── methodatlas
│   └── methodatlas.bat
└── lib/
    └── methodatlas-<version>.jar

Run the CLI from the bin directory, for example:

cd methodatlas-<version>/bin
./methodatlas /path/to/project

Usage

./methodatlas [options] [path1] [path2] ...

If no scan path is provided, the current directory is scanned. Multiple root paths are supported.

Output modes

CSV mode (default)

CSV mode prints a header followed by one record per discovered test method.

Without AI:

fqcn,method,loc,tags

With AI:

fqcn,method,loc,tags,ai_security_relevant,ai_display_name,ai_tags,ai_reason

Example:

fqcn,method,loc,tags
com.acme.tests.SampleOneTest,alpha,8,fast;crypto
com.acme.tests.SampleOneTest,beta,6,param
com.acme.tests.SampleOneTest,gamma,4,nested1;nested2
com.acme.other.AnotherTest,delta,3,

Plain mode

Enable plain mode with -plain:

./methodatlas -plain /path/to/project

Plain mode renders one line per method:

com.acme.tests.SampleOneTest, alpha, LOC=8, TAGS=fast;crypto
com.acme.tests.SampleOneTest, beta, LOC=6, TAGS=param
com.acme.tests.SampleOneTest, gamma, LOC=4, TAGS=nested1;nested2
com.acme.other.AnotherTest, delta, LOC=3, TAGS=-

If a method has no source-level JUnit tags, plain mode prints TAGS=-.

AI enrichment

When AI support is enabled, MethodAtlas submits each parsed test class to a provider-agnostic suggestion engine and merges returned method-level suggestions into the emitted output.

The AI subsystem can:

classify whether a test is security-relevant
propose a SECURITY: ... display name
assign controlled taxonomy tags
provide a short rationale

Supported providers:

auto
ollama
openai
openrouter
anthropic

In auto mode, MethodAtlas prefers a reachable local Ollama instance and otherwise falls back to an OpenAI-compatible provider when an API key is configured.

Complete command-line arguments

General options

Argument	Meaning	Default
`-plain`	Emit plain text instead of CSV	CSV mode
`[path ...]`	One or more root paths to scan	Current directory

AI options

Argument	Meaning	Notes / default
`-ai`	Enable AI enrichment	Disabled by default
`-ai-provider <provider>`	Select provider	`auto`, `ollama`, `openai`, `openrouter`, `anthropic`
`-ai-model <model>`	Provider-specific model identifier	Default is `qwen2.5-coder:7b`
`-ai-base-url <url>`	Override provider base URL	Provider-specific default URL is used otherwise
`-ai-api-key <key>`	Supply API key directly on the command line	Useful for quick experiments; env vars are often preferable
`-ai-api-key-env <name>`	Read API key from an environment variable	Used if `-ai-api-key` is not supplied
`-ai-taxonomy <path>`	Load taxonomy text from an external file	Overrides built-in taxonomy text
`-ai-taxonomy-mode <mode>`	Select built-in taxonomy mode	`default` or `optimized`; default is `default`
`-ai-max-class-chars <count>`	Skip AI analysis for larger classes	Default is `40000`
`-ai-timeout-sec <seconds>`	Set request timeout for provider calls	Default is `90` seconds
`-ai-max-retries <count>`	Set retry limit for AI operations	Default is `1`

Unknown options cause an error. Missing option values also fail fast.

Argument details

`-plain`

Switches output rendering from CSV to a human-readable line-oriented format. This affects rendering only; method discovery and AI classification behavior remain the same.

`-ai`

Turns on AI enrichment. Without this flag, MethodAtlas behaves as a pure static scanner and emits only source-derived metadata. When this flag is present, the application initializes an AI suggestion engine before scanning.

`-ai-provider <provider>`

Selects the provider implementation.

Accepted values are case-insensitive because the CLI normalizes them internally before mapping them to the provider enum. Available providers are:

auto
ollama
openai
openrouter
anthropic

auto is the default.

`-ai-model <model>`

Specifies the provider-specific model name. Examples include local Ollama model names or hosted model identifiers accepted by OpenAI-compatible providers. The default is qwen2.5-coder:7b.

`-ai-base-url <url>`

Overrides the provider base URL.

If omitted, MethodAtlas uses these defaults:

Provider	Default base URL
`auto`	`http://localhost:11434`
`ollama`	`http://localhost:11434`
`openai`	`https://api.openai.com`
`openrouter`	`https://openrouter.ai/api`
`anthropic`	`https://api.anthropic.com`

This is useful for self-hosted gateways, proxies, compatible endpoints, or non-default local deployments.

`-ai-api-key <key>`

Provides the API key directly. This takes precedence over -ai-api-key-env because the resolved API key logic first checks the explicit key and only then consults the environment variable.

`-ai-api-key-env <name>`

Reads the API key from an environment variable such as:

export OPENROUTER_API_KEY=...
./methodatlas -ai -ai-provider openrouter -ai-api-key-env OPENROUTER_API_KEY /path/to/tests

If both -ai-api-key and -ai-api-key-env are omitted, providers that require hosted authentication will be unavailable.

`-ai-taxonomy <path>`

Loads taxonomy text from an external file instead of using the built-in taxonomy. This lets you tailor classification categories or rules to your own security testing conventions.

`-ai-taxonomy-mode <mode>`

Selects one of the built-in taxonomy variants:

default — more descriptive, human-readable taxonomy
optimized — more compact taxonomy intended to improve model reliability and reduce prompt size

When -ai-taxonomy is also supplied, the external taxonomy file takes precedence.

`-ai-max-class-chars <count>`

Sets the maximum serialized class size eligible for AI analysis. If a class source exceeds this number of characters, MethodAtlas skips AI classification for that class and continues scanning normally.

`-ai-timeout-sec <seconds>`

Configures the timeout applied to AI provider requests. The default is 90 seconds.

`-ai-max-retries <count>`

Configures the retry count retained in AI runtime options. The current default is 1.

Example commands

Basic scan:

./methodatlas /path/to/project

Plain output:

./methodatlas -plain /path/to/project

AI with OpenRouter and direct API key:

./methodatlas -ai -ai-provider openrouter -ai-api-key YOUR_API_KEY -ai-model stepfun/step-3.5-flash:free /path/to/junit/tests

AI with OpenRouter and environment variable:

export OPENROUTER_API_KEY=YOUR_API_KEY
./methodatlas -ai -ai-provider openrouter -ai-api-key-env OPENROUTER_API_KEY -ai-model stepfun/step-3.5-flash:free /path/to/junit/tests

AI with local Ollama:

./methodatlas -ai -ai-provider ollama -ai-model qwen2.5-coder:7b /path/to/junit/tests

Automatic provider selection:

./methodatlas -ai /path/to/junit/tests

Highlighted example: AI extension in action

In a real packaged setup, running MethodAtlas from the unzipped distribution against a subset of MethodAtlas and ZeroEcho test sources with:

./methodatlas -ai -ai-provider openrouter -ai-api-key OBTAIN_YOUR_API_KEY -ai-model stepfun/step-3.5-flash:free some/dir/with/junit/tests/

produced output such as:

fqcn,method,loc,tags,ai_security_relevant,ai_display_name,ai_tags,ai_reason
org.egothor.methodatlas.MethodAtlasAppTest,csvMode_detectsMethodsLocAndTags,22,,false,,,"Test verifies functional output format and data extraction of MethodAtlasApp, not security properties."
org.egothor.methodatlas.MethodAtlasAppTest,plainMode_detectsMethodsLocAndTags,20,,false,,,"Test verifies functional output format and data extraction of MethodAtlasApp, not security properties."
zeroecho.core.alg.aes.AesGcmCrossCheckTest,aesGcm_stream_vs_jca_ctxOnly_crosscheck,52,,true,SECURITY: crypto - cross-check AES-GCM stream encryption with JCA reference,security;crypto,"The test verifies that the custom AES-GCM stream implementation produces identical ciphertexts and plaintexts as the JCA reference, ensuring cryptographic correctness and preventing failures that could lead to loss of confidentiality or integrity."
zeroecho.core.alg.aes.AesLargeDataTest,aesGcmLargeData_ctxOnly,27,,true,SECURITY: crypto - AES-GCM round-trip with context-only parameters,security;crypto,"Tests encryption and decryption correctness for large data using AES-GCM, ensuring the authenticated encryption mechanism functions properly for confidentiality and integrity."
zeroecho.core.alg.aes.AesLargeDataTest,aesGcmLargeData_headerCodec,29,,true,SECURITY: crypto - AES-GCM round-trip with header codec,security;crypto,"Validates AES-GCM with an in-band header codec, confirming correct handling of additional authenticated data in the encryption process."
zeroecho.core.alg.aes.AesLargeDataTest,aesCbcPkcs5LargeData_ctxOnly,27,,true,SECURITY: crypto - AES-CBC/PKCS7Padding round-trip with context-only IV,security;crypto,"Ensures AES-CBC encryption and decryption with PKCS7 padding works correctly for large data, testing confidentiality without integrity protection."
zeroecho.core.alg.mldsa.MldsaLargeDataTest,mldsa_complete_suite_streaming_sign_verify_large_data,24,,true,SECURITY: crypto - ML-DSA streaming signature and verification for large data with integrity check,security;crypto;owasp,"Validates cryptographic correctness of ML-DSA signature creation and verification, including handling large data streams, signature length checks, and rejection of tampered signatures via bit-flip, ensuring data integrity and resistance to forgery."

What this shows in practice:

Functional tests remain untouched.
Security-relevant cryptographic tests are detected correctly.
The tool suggests consistent taxonomy tags such as security, crypto, and, where appropriate, owasp.
The generated display names are already suitable as candidate @DisplayName values.
The rationale column explains why a method was classified as security-relevant.

For a programmer, this turns a raw test tree into a searchable, structured inventory of security tests without requiring manual tagging of every method.

Built-in security taxonomy

The prompt builder enforces a closed tag set so that providers do not invent categories. The built-in taxonomy covers these security areas:

auth
access-control
crypto
input-validation
injection
data-protection
logging
error-handling
owasp

Every security-relevant method must include the umbrella tag security, and suggested display names should follow:

SECURITY: <security property> - <scenario>

MethodAtlas ships both a default taxonomy and a more compact optimized taxonomy.

Why this is useful

MethodAtlas is useful when you need to:

inventory a large JUnit suite quickly
find tests that already validate security properties
identify where security tagging is inconsistent or missing
export structured metadata for reporting, dashboards, or CI jobs
review security test coverage before an audit or release

Because the application emits one row per test method, the output is easy to pipe into shell scripts, spreadsheets, data pipelines, or further static analysis.

Notes

The scanner currently considers files ending with *Test.java.
AI classification is class-contextual: the full class source is submitted so the model can classify methods with more context.
If AI support is enabled but engine initialization fails, the application aborts.
If AI classification of a particular class fails, the scan continues and MethodAtlas emits base metadata without AI suggestions for that class.